PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G113300.1
Common NameB456_007G113300, LOC105802851
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 387aa    MW: 43760.5 Da    PI: 6.0355
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G113300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.1e-14200251155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Gorai.007G113300.1 200 QRMTHIAVERNRRRQMNDYLNSLRSLMPPC---YIQRGDQASIIAGAIDFVKELE 251
                         79****************************...*******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.08E-12198255No hitNo description
SuperFamilySSF474597.33E-17199264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.126199250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-15200262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-11200251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11205256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MERLQGPINP YFLGEHLEVE CLEQGFISCE RLKLGEEEEE EAHFSIPSFE EKMPFLQMLQ  60
SVESPQLFAF KEPNFQTLLR LQHMKKPWEL NTNPFIPEME TQVQALELES CVTHETVLDL  120
HSPVKSETKE LKKSPPSSSC AEVLSSGSNQ HQPKSDNCSG EPNLGSSPQK IFTKSPPITR  180
ERRKRKRTKA AKNKEEVESQ RMTHIAVERN RRRQMNDYLN SLRSLMPPCY IQRGDQASII  240
AGAIDFVKEL EQLLQSLEAQ KRTGKVHESN NSMSNPAMEI HQQEYENGSE DGHCGEEVKA  300
ESKTGAAEVE VNVIHNHVNL KIQCSRRAGQ LIQAIVTLET LRLTVLHLNI TTSRASVLYS  360
FNLKMEDDSA LRSADEIAAA VHQIFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186RRKRKR
2200211RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490188.10.0PREDICTED: transcription factor bHLH67-like isoform X1
TrEMBLA0A0D2SBI30.0A0A0D2SBI3_G
STRINGPOPTR_0014s10190.11e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.11e-65bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]